Scaffold Ga0326728_10010437

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10010437
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21734
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (93.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002376	Metagenome / Metatranscriptome	566	Y
F030980	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1001043713	F030980	AGGAG	MEKIVKGSYWLGLLSSLIALGLRSLNAFGIMTPEVVKQGQTVWYMSFYKGALLFFLIAIATASYASVRGERT
Ga0326728_1001043715	F002376	AGGGGG	MQIFPKLIRFARKSPREQLRSVRSHLVEMDWYWKIHSPGNDRTVYLTGLFGSGRQYVTELMLQYIGERAKYLHQTIRCHSNPTSMIYSGHATMRHVSNDQALPAVTGRILEAVRSGFANLIFVYRHPLDSLLTNWVYWRAYIRDTRTGIWSISWVYKNTDDLCADLERNFLEFKAFAEGDHSFWAGLREPRFLSFQEFVEETELFLQSATLTLRLEDFMIDPLKEFSKIVELMGVDLDLSRLSLPPPRSKPYGYLAVKEKVPPFRNFINGLDAETKRRIKEIGYRL
Ga0326728_1001043732	F030980	AGGAG	VEKQIVTVGYWLGILSSLIALGLRALNIFGILAPNVVQQGKTLWYMSFYKGALLFFLIAIATASYTFVRSEKTL